Unverified Commit 3b75131b authored by Ricardo Wurmus's avatar Ricardo Wurmus
Browse files

gnu: Add r-biomartr.

* gnu/packages/bioconductor.scm (r-biomartr): New variable.
parent 62e1e3c1
......@@ -3417,6 +3417,53 @@ (define-public r-biomart
powerful online queries from gene annotation to database mining.")
(license license:artistic2.0)))
 
;; This is a CRAN package, but it depends on a Bioconductor package:
;; r-biomart
(define-public r-biomartr
(package
(name "r-biomartr")
(version "1.0.2")
(source (origin
(method url-fetch)
(uri (cran-uri "biomartr" version))
(sha256
(base32
"0hr7wks88lbfcqzjzm4x265dk4lpmc3i2ndp7xcrx8ssj76wrmkz"))))
(properties `((upstream-name . "biomartr")))
(build-system r-build-system)
(propagated-inputs
(list r-biomart
r-biostrings
r-curl
r-data-table
r-downloader
r-dplyr
r-fs
r-httr
r-jsonlite
r-philentropy
r-purrr
r-r-utils
r-rcurl
r-readr
r-stringr
r-tibble
r-withr
r-xml))
(native-inputs (list r-knitr))
(home-page "https://docs.ropensci.org/biomartr/")
(synopsis "Genomic data retrieval")
(description
"Perform large scale genomic data retrieval and functional annotation
retrieval. This package aims to provide users with a standardized way to
automate genome, proteome, RNA, coding sequence (CDS), GFF, and metagenome
retrieval from NCBI RefSeq, NCBI Genbank, ENSEMBL, and UniProt databases.
Furthermore, an interface to the BioMart database allows users to retrieve
functional annotation for genomic loci. In addition, users can download
entire databases such as NCBI RefSeq, NCBI nr, NCBI nt, NCBI Genbank, etc with
only one command.")
(license license:gpl2)))
(define-public r-biocparallel
(package
(name "r-biocparallel")
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment