This project is mirrored from git://git.savannah.gnu.org/guix.git. Pull mirroring updated .
  1. 21 Jan, 2016 1 commit
    • Mark H Weaver's avatar
      gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}. · 86fa2ea9
      Mark H Weaver authored
      * gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
        gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
        gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
      * gnu-system.am (dist_patch_DATA): Add them.
      * gnu/packages/image.scm (libtiff): Update to 4.0.6.
        [source]: Add patches.
      86fa2ea9
  2. 20 Jan, 2016 2 commits
    • Eric Bavier's avatar
      gnu: Add perl-module-pluggable. · 97b07aaa
      Eric Bavier authored
      This Perl module was moved out of Perl core in v5.19.0.
      
      * gnu/packages/perl.scm (perl-module-pluggable): New variable.
      * gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
      * gnu-system.am (dist_patch_DATA): Add it.
      97b07aaa
    • Andreas Enge's avatar
      gnu: doxygen: Update to 1.8.11. · 7c853c02
      Andreas Enge authored
      * gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
        Drop one patch.
        [build-system]: Switch to cmake-build-system, since gnu-build-system
        is not supported any more.
        [arguments]: Adapt.
        [native-inputs]: Drop unused perl.
      * gnu/packages/patches/doxygen-tmake.patch: Remove file.
      * gnu/packages/patches/doxygen-test.patch: Adapt.
      * gnu-system.am (dist_patch_DATA): Unregister patch.
      7c853c02
  3. 15 Jan, 2016 2 commits
  4. 14 Jan, 2016 2 commits
    • Ricardo Wurmus's avatar
      gnu: bowtie: Update to 2.2.6. · 0047d26a
      Ricardo Wurmus authored
      * gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
      [source]: Remove patch; do not set CC and CPP variables.
      [inputs]: Add "tbb".
      [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
      "install" phase.
      * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
      * gnu-system.am (dist_patch_DATA): Remove patch file.
      0047d26a
    • Ludovic Courtès's avatar
      gnu: gawk: Protect against random failures of the 'fts' test. · 76002e54
      Ludovic Courtès authored
      * gnu/packages/patches/gawk-fts-test.patch: New file.
      * gnu/packages/gawk.scm (gawk)[source]: Use it.
      * gnu-system.am (dist_patch_DATA): Add it.
      76002e54
  5. 12 Jan, 2016 3 commits
    • Eric Bavier's avatar
      gnu: boost: Update to 1.60.0. · c91d3fb7
      Eric Bavier authored
      * gnu/packages/boost.scm (boost): Update to 1.60.0.
        [source]: Remove patch.
      * gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
      * gnu-system.am (dist_patch_DATA): Remove patch.
      
      Also fix dependent packages:
      
      * gnu/packages/patches/csound-header-ordering.patch: New patch.
      * gnu/packages/audio.scm (csound)[source]: Use it.
        [arguments]: Add 'set-flags phase.
      * gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
      * gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
        (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
        (librevenge)[inputs]: Move boost from here...
        [propogated-inputs]: to here.
        [arguments]: Add LDFLAGS to #:configure-flags.
      * gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
      * gnu/packages/graphics.scm (openimageio): Use it.
      * gnu-system.am (dist_patch_DATA): Add patches.
      c91d3fb7
    • Mark H Weaver's avatar
      gnu: perl: Add fix for CVE-2015-8607. · 203795ac
      Mark H Weaver authored
      * gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
      * gnu-system.am (dist_patch_DATA): Add it.
      * gnu/packages/perl.scm (perl)[source]: Add patch.
      203795ac
    • Mark H Weaver's avatar
      gnu: sudo: Add fix for CVE-2015-5602. · 16aa6491
      Mark H Weaver authored
      * gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
      * gnu-system.am (dist_patch_DATA): Add it.
      * gnu/packages/admin.scm (sudo)[source]: Add patch.
      16aa6491
  6. 10 Jan, 2016 1 commit
    • Ben Woodcroft's avatar
      gnu: bedtools: Update to 2.25.0. · 9b9b7ffd
      Ben Woodcroft authored
      * gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
      [source]: Remove patch merged upstream.
      [arguments]: Use 'modify-phases'.  Remove
      'patch-makefile-SHELL-definition' phase.
      * gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
      * gnu-system.am (dist_patch_DATA): Remove it.
      9b9b7ffd
  7. 08 Jan, 2016 1 commit
  8. 07 Jan, 2016 3 commits
    • Leo Famulari's avatar
      gnu: w3m: Enable SSL, disable broken protocols and ciphers. · 62339e2d
      Leo Famulari authored
      Fixes <http://bugs.gnu.org/16791>.
      
      * gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
      * gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
      * gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
      * gnu/packages/w3m.scm (w3m)[source]: Add patches.
      * gnu-system.am (dist_patch_DATA): Add the new files.
      62339e2d
    • Leo Famulari's avatar
      gnu: w3m: Update patch to use '-p1'. · e6352001
      Leo Famulari authored
      * gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
      * gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
      prefix level to '-p1'.
      * gnu-system.am (dist_patch_DATA): Update patch name.
      * gnu/packages/w3m.scm (w3m)[source]: Update patch name.
      [source]: Drop patch flag -p0.
      e6352001
    • Efraim Flashner's avatar
      gnu: flex: Update to 2.6.0. · 93b3a8b0
      Efraim Flashner authored
      * gnu/packages/flex.scm (flex): Update to 2.6.0.
      [source]: Remove flex-bison-tests.patch.
      * gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
      * gnu/packages/patches/flex-bison-tests.patch: Remove it.
      93b3a8b0
  9. 05 Jan, 2016 3 commits
    • Efraim Flashner's avatar
      gnu: gnutls: Update to 3.4.7. · 5a75865f
      Efraim Flashner authored
      * gnu/packages/tls.scm (gnutls): Update to 3.4.7.
      [source]: Remove gnutls-doc-fix.patch.
      [arguments]: Remove delete-prebuilt-unfixed-info-file phase.
      [native-inputs]: Remove texinfo.
      * gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
      5a75865f
    • Roel Janssen's avatar
      gnu: Add LDC. · a7ec569c
      Roel Janssen authored
      * gnu/packages/ldc.scm: New file.
      * gnu/packages/patches/ldc-disable-tests.patch: New file.
      * gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
        (dist_patch_DATA): Add patch file.
      a7ec569c
    • Ludovic Courtès's avatar
      gnu: python: Honor 'C_INCLUDE_PATH'. · a2ab82db
      Ludovic Courtès authored
      This is a followup to 009b53fd.
      
      * gnu/packages/patches/python-3-search-paths.patch: Check
      'C_INCLUDE_PATH' instead of 'CPATH'.
      * gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
      a2ab82db
  10. 04 Jan, 2016 3 commits
    • Ricardo Wurmus's avatar
      gnu: gtk+: Add patch to support GUIX_GTK3_PATH. · 4828ff91
      Ricardo Wurmus authored
      * gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
      * gnu-system.am (dist_patch_DATA): Add it.
      * gnu/packages/gtk.scm (gtk+) [source]: Add patch.
      [native-search-paths]: Add search path for GUIX_GTK3_PATH.
      4828ff91
    • Ricardo Wurmus's avatar
      gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. · 2a6afac9
      Ricardo Wurmus authored
      * gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
      * gnu-system.am (dist_patch_DATA): Add it.
      * gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
      [native-search-paths]: Add search path for GUIX_GTK2_PATH.
      2a6afac9
    • Ricardo Wurmus's avatar
      gnu: julia: Update to 0.4.2. · c2e87caa
      Ricardo Wurmus authored
      * gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
      * gnu-system.am (dist_patch_DATA): Remove it.
      * gnu/packages/julia.scm (julia): Update to 0.4.2.
      [arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
      "patch-include-path" with "fix-include-and-link-paths"; add phase
      "hardcode-paths"; add missing make-flags.
      [inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
      "coreutils"; add "libuv-julia"; add "wget"; add "which".
      [native-inputs]: Remove "which".
      c2e87caa
  11. 03 Jan, 2016 1 commit
  12. 02 Jan, 2016 1 commit
    • Eric Bavier's avatar
      gnu: Add Asymptote. · 20977871
      Eric Bavier authored
      * gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
      * gnu/packages/plotutils.scm (asymptote): New variable.
      * gnu/packages/patches/asymptote-gsl2.patch: New file.
      * gnu-system.am (dist_patch_DATA): Add it.
      20977871
  13. 01 Jan, 2016 1 commit
    • Ludovic Courtès's avatar
      gnu: findutils: Update to 4.6.0. · e80d2555
      Ludovic Courtès authored
      * gnu/packages/patches/findutils-absolute-paths.patch: Remove.
      * gnu/packages/patches/findutils-test-xargs.patch: New file.
      * gnu-system.am (dist_patch_DATA): Adjust accordingly.
      * gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
      'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
      e80d2555
  14. 29 Dec, 2015 1 commit
    • Leo Famulari's avatar
      gnu: fuse: Update to 2.9.4. · b7e7d1b9
      Leo Famulari authored
      * gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
      * gnu-system.am (dist_patch_DATA): Remove it.
      * gnu/packages/linux.scm (fuse): Update to 2.9.4.
        [source]: Remove patch.
      b7e7d1b9
  15. 23 Dec, 2015 1 commit
    • Mark H Weaver's avatar
      gnu: icecat: Update to 38.5.0-gnu1. · 09719041
      Mark H Weaver authored
      * gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
        gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
        gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
        gnu/packages/patches/icecat-CVE-2015-7205.patch,
        gnu/packages/patches/icecat-CVE-2015-7210.patch,
        gnu/packages/patches/icecat-CVE-2015-7212.patch,
        gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
        gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
        gnu/packages/patches/icecat-CVE-2015-7214.patch,
        gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
        gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
        gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
        gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
      * gnu-system.am (dist_patch_DATA): Remove them.
      * gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
        [source]: Remove patches.
      09719041
  16. 21 Dec, 2015 1 commit
  17. 18 Dec, 2015 1 commit
  18. 17 Dec, 2015 1 commit
    • Mark H Weaver's avatar
      gnu: icecat: Add fixes for several security flaws. · 3faf214a
      Mark H Weaver authored
      * gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
        gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
        gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
        gnu/packages/patches/icecat-CVE-2015-7205.patch,
        gnu/packages/patches/icecat-CVE-2015-7210.patch,
        gnu/packages/patches/icecat-CVE-2015-7212.patch,
        gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
        gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
        gnu/packages/patches/icecat-CVE-2015-7214.patch,
        gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
        gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
        gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
      * gnu-system.am (dist_patch_DATA): Add them.
      * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
      3faf214a
  19. 15 Dec, 2015 1 commit
  20. 14 Dec, 2015 1 commit
    • Efraim Flashner's avatar
      gnu: bluez: Update to 5.36. · 9c1c2a7f
      Efraim Flashner authored
      * gnu/packages/linux.scm (bluez): Update to 5.36.
      [source]: Remove patch.
      * gnu/packages/patches/bluez-tests.patch: Remove file.
      * gnu-system.am (dist_patch_DATA): Remove it.
      9c1c2a7f
  21. 13 Dec, 2015 2 commits
    • Ludovic Courtès's avatar
      gnu: perl: Build deterministically, and make byproducts deterministic. · 4187fe75
      Ludovic Courtès authored
      With this, a --rounds=2 build passes, and timestamps in POD files can be
      controlled with 'SOURCE_DATE_EPOCH'.
      
      * gnu/packages/patches/perl-deterministic-ordering.patch,
      gnu/packages/patches/perl-no-build-time.patch,
      gnu/packages/patches/perl-source-date-epoch.patch: New files.
      * gnu/packages/perl.scm (perl)[source]: Use them.
      * gnu-system.am (dist_patch_DATA): Add them.
      4187fe75
    • Ludovic Courtès's avatar
      gnu: perl: Update to 5.22.0. · 4de35074
      Ludovic Courtès authored
      * gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
      "perl-module-pluggable-search.patch" since Module::Pluggable appears to
      be gone.
      [arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
      -std=c89 with -std=gnu89.
      * gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
      phase.
      * gnu/packages/patches/perl-no-sys-dirs.patch: Update.
      * gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
      * gnu-system.am (dist_patch_DATA): Adjust accordingly.
      4de35074
  22. 09 Dec, 2015 1 commit
  23. 07 Dec, 2015 1 commit
    • Mark H Weaver's avatar
      gnu: libxml2: Update to 2.9.3. · 821060f3
      Mark H Weaver authored
      * gnu/packages/patches/libxml2-CVE-2015-1819.patch,
        gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
        gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
        gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
        gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
        gnu/packages/patches/libxml2-CVE-2015-8035.patch,
        gnu/packages/patches/libxml2-bug-737840.patch,
        gnu/packages/patches/libxml2-bug-738805.patch,
        gnu/packages/patches/libxml2-bug-746048.patch,
        gnu/packages/patches/libxml2-bug-747437.patch,
        gnu/packages/patches/libxml2-bug-751603.patch,
        gnu/packages/patches/libxml2-bug-751631.patch,
        gnu/packages/patches/libxml2-bug-754946.patch,
        gnu/packages/patches/libxml2-bug-754947.patch,
        gnu/packages/patches/libxml2-bug-755857.patch,
        gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
        gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
        gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
        gnu/packages/patches/libxml2-node-sort-order-pt2.patch: Delete files.
      * gnu-system.am (dist_patch_DATA): Remove them.
      * gnu/packages/xml.scm (libxml2): Update to 2.9.3.  Remove patches.
      821060f3
  24. 05 Dec, 2015 1 commit
    • Leo Famulari's avatar
      gnu: Add python-configobj. · 99fffa8a
      Leo Famulari authored
      * gnu/packages/python.scm (python-configobj, python2-configobj): New
        variables.
      * gnu/packages/patches/python-configobj-setuptools.patch: New file.
      * gnu-system.am (dist_patch_DATA): Add it.
      99fffa8a
  25. 04 Dec, 2015 1 commit
    • Mark H Weaver's avatar
      gnu: icecat: Update to 38.4.0-gnu1. · b9fa245f
      Mark H Weaver authored
      * gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
        gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
        gnu/packages/patches/icecat-CVE-2015-7188.patch,
        gnu/packages/patches/icecat-CVE-2015-7189.patch,
        gnu/packages/patches/icecat-CVE-2015-7193.patch,
        gnu/packages/patches/icecat-CVE-2015-7194.patch,
        gnu/packages/patches/icecat-CVE-2015-7196.patch,
        gnu/packages/patches/icecat-CVE-2015-7197.patch,
        gnu/packages/patches/icecat-CVE-2015-7198.patch,
        gnu/packages/patches/icecat-CVE-2015-7199.patch: Delete files.
      * gnu-system.am (dist_patch_DATA): Remove them.
      * gnu/packages/gnuzilla.scm (icecat): Update to 38.4.0-gnu1.  Remove the
        obsolete patches.
      b9fa245f
  26. 02 Dec, 2015 2 commits
  27. 29 Nov, 2015 1 commit
    • Ludovic Courtès's avatar
      gnu: python: Make 'sys.version' deterministic. · 9820a6d4
      Ludovic Courtès authored
      * gnu/packages/patches/python-2-deterministic-build-info.patch,
        gnu/packages/patches/python-3-deterministic-build-info.patch: New
        files.
      * gnu/packages/python.scm (python-2, python): Use them.
      * gnu-system.am (dist_patch_DATA): Add them.
      9820a6d4